Most of the books are now non-canon. There are several books that were recently written with the new canon in mind, and those are canon, but any of the "classic Star Wars books" like the Thrawn Trilogy or the Jedi Academy trilogy or the X-Wing series are non-canon and go under the label of "Legends". Doesn't mean they can't take those elements and make them canon, though. Clone Wars made Black Sun canon, for example.
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